Files in PhenStat

Statistical analysis of phenotypic data

R/plotPhenTestResult.R R/LogisticFramework.R R/PhenTestResult.R R/plotPhenList.R R/graphsResults.R R/GenerateReport.R R/classes.R R/JSONOutput.R R/transformation.R R/TFFramework.R R/summaryOutput.R R/SideFunctions.R R/FETFramework.R R/WhatIsNew.R R/graphsDataset.R R/PhenList.R R/classification.R R/MMFramework.R R/testDataset.R R/RRFramework.R R/vectorOutput.R R/PhenSmoothWin.R R/diagnostictest.R man/setGenotype.Rd man/summaryOutput.Rd man/finalLRModel.Rd man/getStat.Rd man/classificationTag.Rd man/htestPhenStat-class.Rd man/plot.PhenList.Rd man/scatterplotGenotypeWeightResult.Rd man/scatterplotSexGenotypeBatchResult.Rd man/setSex.Rd man/analysedDatasetPhenList.Rd man/boxplotSexGenotypeBatch.Rd man/vectorOutput.Rd man/getColumn.Rd man/plot.PhenTestResult.Rd man/setMissingValue.Rd man/analysisResults.Rd man/testFinalLRModel.Rd man/batchIn.Rd man/modelFormulaLR.Rd man/testFinalModel.Rd man/getColumnBatchAdjusted.Rd man/scatterplotSexGenotypeBatch.Rd man/qqplotRandomEffects.Rd man/testGenotype.Rd man/printTabStyle.Rd man/qqplotGenotype.Rd man/formulaDeterminingLambda.Rd man/modelFormula.Rd man/methodText.Rd man/getCountMatrices.Rd man/getMatrix.Rd man/matrixCount.Rd man/getColumnWeightBatchAdjusted.Rd man/startModel.Rd man/PhenTestResult-class.Rd man/parserOutputSummary.Rd man/PhenList.Rd man/TFDataset.Rd man/pvalue.Rd man/analysedDataset.Rd man/subsetText.Rd man/PhenList-class.Rd man/startLRModel.Rd man/getColumnView.Rd man/method.Rd man/analysedSubset.Rd man/getVariables.Rd man/transformation.Rd man/transformationText.Rd man/boxplotSexGenotype.Rd man/parserOutputTFSummary.Rd man/setBatch.Rd man/scatterplotGenotypeWeight.Rd man/performTransformation.Rd man/refGenotype.Rd man/PhenStatReport.Rd man/dataset.Rd man/determiningLambda.Rd man/FisherExactTest.Rd man/plotResidualPredicted.Rd man/LRDataset.Rd man/performReverseTransformation.Rd man/getDataset.Rd man/boxplotSexGenotypeBatchAdjusted.Rd man/hemiGenotype.Rd man/getGenotypeEffect.Rd man/noSexes.Rd man/transformationJSON.Rd man/summaryPhenListResult.Rd man/RRTest.Rd man/finalModel.Rd man/setWeight.Rd man/vectorOutputMatrices.Rd man/columnChecks.Rd man/startTFModel.Rd man/testDataset.Rd man/multipleBatches.Rd man/parserOutputSummaryLR.Rd man/LargeDataObject-class.Rd man/finalTFModel.Rd man/parameters.Rd man/htest-class.Rd man/printLROutput.Rd man/checkDataset.Rd man/comparison.Rd man/getPercentageMatrix.Rd man/PhenTestResult.Rd man/weightIn.Rd man/categoricalBarplot.Rd man/columnLevels.Rd man/boxplotSexGenotypeWeightBatchAdjusted.Rd man/getVariable.Rd man/recommendMethod.Rd man/qqplotRotatedResiduals.Rd man/generateGraphs.Rd man/JSONOutput.Rd man/dim.Rd man/boxplotSexGenotypeResult.Rd man/boxplotResidualBatch.Rd tests/runTests.R inst/doc/PhenStat.R inst/doc/PhenStat.pdf inst/unitTests/unitTests.R