assayDataAmp: Access the amplicon data of an AVASet.

Description Usage Arguments Value Author(s) See Also Examples

Description

Similar to assayData of the Biobase ExpressionSet, this function returns the assay data of the amplicon slot of an instance of the AVASet.

Usage

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    assayDataAmp(object) 

Arguments

object

An link{AVASet-class} object.

Value

The assay data of the amplicon slot consists of a list of two data frames with the number of forward and reverse reads of all amplicons for each sample (see AVASet-class for details).

Author(s)

Christoph Bartenhagen

See Also

fDataAmp, featureDataAmp, AVASet-class

Examples

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    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)

    # show contents of amplicon assay data
    assayDataAmp(avaSetExample)

R453Plus1Toolbox documentation built on May 20, 2017, 9:53 p.m.

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