Access the amplicon data of an AVASet.

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Description

Similar to assayData of the Biobase ExpressionSet, this function returns the assay data of the amplicon slot of an instance of the AVASet.

Usage

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    assayDataAmp(object) 

Arguments

object

An link{AVASet-class} object.

Value

The assay data of the amplicon slot consists of a list of two data frames with the number of forward and reverse reads of all amplicons for each sample (see AVASet-class for details).

Author(s)

Christoph Bartenhagen

See Also

fDataAmp, featureDataAmp, AVASet-class

Examples

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    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)

    # show contents of amplicon assay data
    assayDataAmp(avaSetExample)

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