ava2vcf: Convert an AVASet object into a VCF object

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

Converts all variants in a given AVASet object into a VCF object and writes it to a file in VCF format if filename is given.

Usage

  ava2vcf(object, filename, annot)

Arguments

object	An object of class AVASet.
filename	The name of the VCF file to write in, if ommitted no file is written.
annot	An object of class AnnotatedVariants. Optional, if given variants are annotated with informations from dbSNP.

Value

An object of class VCF-class

Author(s)

Christian Ruckert

See Also

AnnotatedVariants-class, AVASet-class, VCF-class, writeVcf

Examples

  data("avaSetFiltered")
  vcf <- ava2vcf(avaSetFiltered)

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.