captureArray: Custom capture array design

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

Design of a custom Roche NimbleGen 385k capture array. The array captures short segments corresponding to all exon regions of 92 distinct target genes (genome build hg19). In addition, contiguous genomic regions were represented for three additional genes, i.e. CBFB, MLL, and RUNX1.

Usage

data(captureArray)

Format

Formal class 'CompressedIRangesList'

Source

‘Targeted next-generation sequencing detects point mutations, insertions, deletions, and balanced chromosomal rearrangements as well as identifies novel leukemia-specific fusion genes in a single procedure’ (Leukemia, submitted)

Examples

data(captureArray)

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.