avaSetFiltered: Amplicon Variant Analyzer data import

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

This is an example of an link{AVASet-class} object containing the output of Roche's Amplicon Variant Analyzer Software. It consists of 6 samples, 4 amplicons and 4 variants. The variants were previously filtered according to the amplicon coverage (see setVariantFilter for details about filtering an AVASet object).

Usage

data(avaSetFiltered)

Format

Formal class 'AVASet'

Source

‘Next-generation sequencing technology reveals a characteristic pattern of molecular mutations in 72.8 leukemia by detecting frequent alterations in TET2, CBL, RAS, and RUNX1’ (Kohlmann A et al., J Clin Oncol. 2010 Aug 20;28(24):3858-65. Epub 2010 Jul 19)

Examples

    data(avaSetFiltered)
    avaSetFiltered

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.