fDataAmp: Access the amplicon data of an AVASet.
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Similar to fData of the Biobase ExpressionSet, this function returns the feature data of the amplicon slot of an instance of the
AVASet.
Usage
1
fDataAmp(object)
Arguments
object
An link{AVASet-class} object.
Value
The feature data of the amplicon slot contains the names, primers, start/end positions and reference sequences of all
amplicons (seeAVASet-class for details). It returns a data frame.
Author(s)
Christoph Bartenhagen
See Also
featureDataAmp, assayDataAmp,AVASet-class
Examples
1
2
3
4
5
6
# load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
avaSetExample
# show contents amplicon feature data
fDataAmp(avaSetExample)
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Similar to fData of the Biobase ExpressionSet, this function returns the feature data of the amplicon slot of an instance of the
AVASet.
Usage
1 | fDataAmp(object)
|
Arguments
object |
An |
Value
The feature data of the amplicon slot contains the names, primers, start/end positions and reference sequences of all
amplicons (seeAVASet-class for details). It returns a data frame.
Author(s)
Christoph Bartenhagen
See Also
featureDataAmp, assayDataAmp,AVASet-class
Examples
1 2 3 4 5 6 | # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
avaSetExample
# show contents amplicon feature data
fDataAmp(avaSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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