gcPerPosition: GC-Content Per Position

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

This function plots the GC-content frequency per base position.

Usage

  gcPerPosition(object, range=0.95, type="l", col="blue", xlab="Position", ylab="Frequency", ...)

Arguments

object	An object of class DNAStringSet, ShortRead or SFFContainer.
range	An integer vector of length one or two. If length one only bases up to the percent quantile of read lengths defined by the given value are shown. A vector of length two gives the start and end base between which the GC-content is plotted.
type	The type of the plot (see ‘plot’).
col	The plotting color.
xlab	The X axis label.
ylab	The Y axis label.
...	Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.