GC-Content Per Position

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Description

This function plots the GC-content frequency per base position.

Usage

1
  gcPerPosition(object, range=0.95, type="l", col="blue", xlab="Position", ylab="Frequency", ...)

Arguments

object

An object of class DNAStringSet, ShortRead or SFFContainer.

range

An integer vector of length one or two. If length one only bases up to the percent quantile of read lengths defined by the given value are shown. A vector of length two gives the start and end base between which the GC-content is plotted.

type

The type of the plot (see ‘plot’).

col

The plotting color.

xlab

The X axis label.

ylab

The Y axis label.

...

Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert

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