When many point mutations are detected, the ration of transitions to transversions can be used as quality measure to assess the number of false positives.
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An instance of AVASet or MapperSet storing the detected variants.
For more information about the Ti/Tv ratio see http://www.broadinstitute.org/gsa/wiki/index.php/QC_Methods
list with two elements: A substitution matrix summarizing all
observed substitutions and the transition/transversion ratio.
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