featureDataAmp: Access the amplicon data of an AVASet
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Similar to featureData of the Biobase ExpressionSet, this function returns the feature data and feature meta of the amplicon slot of an
instance of the AVASet.
Usage
1
featureDataAmp(object)
Arguments
object
An link{AVASet-class} object.
Value
The feature data of the amplicon slot contains the names, primers, start/end positions and reference sequences of all amplicons (see
AVASet-class for details). The returned object is of class AnnotatedDataFrame.
Author(s)
Christoph Bartenhagen
See Also
fDataAmp, assayDataAmp, AVASet-class,
Examples
1
2
3
4
5
6
# load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
avaSetExample
# show contents amplicon feature data
featureDataAmp(avaSetExample)
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Similar to featureData of the Biobase ExpressionSet, this function returns the feature data and feature meta of the amplicon slot of an
instance of the AVASet.
Usage
1 | featureDataAmp(object)
|
Arguments
object |
An |
Value
The feature data of the amplicon slot contains the names, primers, start/end positions and reference sequences of all amplicons (see
AVASet-class for details). The returned object is of class AnnotatedDataFrame.
Author(s)
Christoph Bartenhagen
See Also
fDataAmp, assayDataAmp, AVASet-class,
Examples
1 2 3 4 5 6 | # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
avaSetExample
# show contents amplicon feature data
featureDataAmp(avaSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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