flowgramBarplot: Create A Barplot Of The Flow Intensities

Description Usage Arguments Author(s)

View source: R/qualityControl.R

Description

This function creates a barplot of the flow intensities with one bar for each nucleotide in the flow. With the height giving the measured intensity.

Usage

1
2
  flowgramBarplot(x, range=c(0, length(flowgram(x))), xlab="Flow sequence", 
    ylab="Flow intensity", col=c(A="black", C="red", G="blue", T="green"), ...)

Arguments

x

An object of class SFFRead.

range

Two positions between which the flows should be plotted.

xlab

The X axis label.

ylab

The Y axis label.

col

The colors in which the four nucleotids should be plotted.

...

Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert


R453Plus1Toolbox documentation built on Nov. 17, 2017, 11:48 a.m.