flowgramBarplot: Create A Barplot Of The Flow Intensities

Description Usage Arguments Author(s)

Description

This function creates a barplot of the flow intensities with one bar for each nucleotide in the flow. With the height giving the measured intensity.

Usage

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  flowgramBarplot(x, range=c(0, length(flowgram(x))), xlab="Flow sequence", 
    ylab="Flow intensity", col=c(A="black", C="red", G="blue", T="green"), ...)

Arguments

x

An object of class SFFRead.

range

Two positions between which the flows should be plotted.

xlab

The X axis label.

ylab

The Y axis label.

col

The colors in which the four nucleotids should be plotted.

...

Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert



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