baseFrequency: Absolute And Relative Frequency Of The Four Bases.

Description Usage Arguments Details Value Author(s)

View source: R/qualityControl.R

Description

This function returns the absolute and the relative frequency of the four bases (A, C, G, T).

Usage

1
  baseFrequency(object)

Arguments

object

An object of class DNAStringSet, ShortRead or SFFContainer.

Details

This function makes use of the alphabetFrequency function from package Biostrings.

Value

A data.frame with two columns containing the absolute and relative frequencies respectively and six rows, one for each of the four bases (A, C, G, T), one for other symbols contained in the reads and one summarizing the five aforementioned rows.

Author(s)

Christian Ruckert


R453Plus1Toolbox documentation built on Nov. 1, 2018, 2:27 a.m.