Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
|Author||Welliton Souza, Benilton Carvalho <email@example.com>|
|Date of publication||None|
|Maintainer||Welliton Souza <firstname.lastname@example.org>|
|License||GPL (>= 2)|
checkpoint: Save time storing longer analysis step on disk
detectFileFormat: Detect file format
fromRRDNA: Revert codified DNA sequences to original DNA sequences.
matdist: Distance matrix of the similarity between the DNA sequences.
rqc: Main Rqc function
rqcCycleAverageQualityPcaPlot: Biplot of PCA of per cycle read average quality
rqcCycleAverageQualityPlot: Per cycle average quality by files
rqcCycleBaseCallsPlot: Per cycle base calls plot
rqcCycleGCPlot: Per cycle percentual GC plot
rqcCycleQualityBoxPlot: Per cycle quality box plot
rqcCycleQualityPlot: Per cycle quality plot
rqcFileHeatmap: Heatmap of distance matrix of top over-represented reads
rqcGroupCycleAverageQualityPlot: Per group average quality across cycles
Rqc-package: Quality Control Tool for High-Throughput Sequencing Data
rqcQA: Quality Assessment Rqc function
rqcReadFrequencyPlot: Read frequency plot
rqcReadQualityBoxPlot: Per read mean quality box plot
rqcReadQualityPlot: Per read quality plot
rqcReadWidthPlot: Per read width plot
rqcReport: Quality Control HTML Report
RqcResultSet-class: Class RqcResultSet
rqcShinyReport: Interactive Quality Control Report
stats4trim: Minimun read mean quality and maximum percentage loss of...
subsetByGroup: Subset RqcResultSet object by group name.
subsetByPair: Subset RqcResultSet object by pair files.
toRRDNA: Title: Convert DNA sequences to Reduced Representation format