Rqc: Quality Control Tool for High-Throughput Sequencing Data

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

AuthorWelliton Souza, Benilton Carvalho <beniltoncarvalho@gmail.com>
Date of publicationNone
MaintainerWelliton Souza <well309@gmail.com>
LicenseGPL (>= 2)
Version1.8.0
https://github.com/labbcb/Rqc

View on Bioconductor

Files in this package

Rqc/DESCRIPTION
Rqc/NAMESPACE
Rqc/NEWS
Rqc/R
Rqc/R/RcppExports.R Rqc/R/Rqc-package.R Rqc/R/RqcResultSet.R Rqc/R/checkpoint.R Rqc/R/detectFileFormat.R Rqc/R/rqc.R Rqc/R/rqcCycleAverageQualityCalc.R Rqc/R/rqcCycleAverageQualityPcaCalc.R Rqc/R/rqcCycleAverageQualityPcaPlot.R Rqc/R/rqcCycleAverageQualityPlot.R Rqc/R/rqcCycleBaseCallsCalc.R Rqc/R/rqcCycleBaseCallsLinePlot.R Rqc/R/rqcCycleBaseCallsPlot.R Rqc/R/rqcCycleGCCalc.R Rqc/R/rqcCycleGCPlot.R Rqc/R/rqcCycleQualityBoxCalc.R Rqc/R/rqcCycleQualityBoxPlot.R Rqc/R/rqcCycleQualityCalc.R Rqc/R/rqcCycleQualityPlot.R Rqc/R/rqcFileHeatmap.R Rqc/R/rqcGroupCycleAverageQualityCalc.R Rqc/R/rqcGroupCycleAverageQualityPlot.R Rqc/R/rqcQA-methods.R Rqc/R/rqcReadFrquencyCalc.R Rqc/R/rqcReadFrquencyPlot.R Rqc/R/rqcReadQualityBoxCalc.R Rqc/R/rqcReadQualityBoxPlot.R Rqc/R/rqcReadQualityCalc.R Rqc/R/rqcReadQualityPlot.R Rqc/R/rqcReadWidthCalc.R Rqc/R/rqcReadWidthPlot.R Rqc/R/rqcReport.R Rqc/R/rqcShinyReport.R Rqc/R/stats4trim.R Rqc/R/subsetByGroup.R Rqc/R/subsetByPair.R Rqc/R/utils.R
Rqc/README.md
Rqc/build
Rqc/build/vignette.rds
Rqc/inst
Rqc/inst/doc
Rqc/inst/doc/Rqc.R
Rqc/inst/doc/Rqc.Rmd
Rqc/inst/doc/Rqc.html
Rqc/inst/extdata
Rqc/inst/extdata/Rqc.rda
Rqc/inst/templates
Rqc/inst/templates/rqc_report.Rmd
Rqc/man
Rqc/man/Rqc-package.Rd Rqc/man/RqcResultSet-class.Rd Rqc/man/checkpoint.Rd Rqc/man/detectFileFormat.Rd Rqc/man/fromRRDNA.Rd Rqc/man/matdist.Rd Rqc/man/rqc.Rd Rqc/man/rqcCycleAverageQualityPcaPlot.Rd Rqc/man/rqcCycleAverageQualityPlot.Rd Rqc/man/rqcCycleBaseCallsPlot.Rd Rqc/man/rqcCycleGCPlot.Rd Rqc/man/rqcCycleQualityBoxPlot.Rd Rqc/man/rqcCycleQualityPlot.Rd Rqc/man/rqcFileHeatmap.Rd Rqc/man/rqcGroupCycleAverageQualityPlot.Rd Rqc/man/rqcQA.Rd Rqc/man/rqcReadFrequencyPlot.Rd Rqc/man/rqcReadQualityBoxPlot.Rd Rqc/man/rqcReadQualityPlot.Rd Rqc/man/rqcReadWidthPlot.Rd Rqc/man/rqcReport.Rd Rqc/man/rqcShinyReport.Rd Rqc/man/stats4trim.Rd Rqc/man/subsetByGroup.Rd Rqc/man/subsetByPair.Rd Rqc/man/toRRDNA.Rd
Rqc/src
Rqc/src/RRDNA.cpp
Rqc/src/RcppExports.cpp
Rqc/tests
Rqc/tests/testthat
Rqc/tests/testthat.R
Rqc/tests/testthat/test_merge.R
Rqc/tests/testthat/test_rrdna.R
Rqc/vignettes
Rqc/vignettes/Rqc.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.