rqcCycleAverageQualityPlot: Per cycle average quality by files

Description Usage Arguments Value Functions Author(s) See Also Examples

View source: R/rqcCycleAverageQualityPlot.R

Description

This function plots line graph of per cycle average quality.

Usage

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Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

ggplot2 object

Functions

Author(s)

Welliton Souza

See Also

rqcGroupCycleAverageQualityPlot plots cycle-specific quality by groups

Examples

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checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcCycleAverageQualityPlot(rqcResultSet)

Rqc documentation built on Nov. 8, 2020, 5:11 p.m.