rqcCycleQualityPlot: Per cycle quality plot

Description Usage Arguments Value Functions Author(s) Examples

View source: R/rqcCycleQualityPlot.R

Description

Creates a graph of per cycle quality.

Usage

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rqcCycleQualityCalc(rqcResultSet)

rqcCycleQualityPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples

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checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, workers=1)
}, keep="rqcResultSet")
rqcCycleQualityPlot(rqcResultSet)

Rqc documentation built on Nov. 8, 2020, 5:11 p.m.