API for Rqc
Quality Control Tool for High-Throughput Sequencing Data
| Global functions | |
|---|---|
| .cycleBasecall | Source code |
| .cycleQuality | Source code |
| .fileInfo | Source code |
| .mergeCycleBasecall | Source code |
| .mergeCycleQuality | Source code |
| .mergeReadFrequency | Source code |
| .mergeReadQuality | Source code |
| .mergeReadWidth | Source code |
| .readFrequency | Source code |
| .readMeanQuality | Source code |
| .readQuality | Source code |
| .readWidth | Source code |
| .server.Rqc | Source code |
| .ui.Rqc | Source code |
| Rqc | Man page |
| Rqc-package | Man page |
| RqcResultSet-class | Man page |
| checkpoint | Man page Source code |
| detectFileFormat | Man page Source code |
| fromRRDNA | Man page Source code |
| matdist | Man page Source code |
| perCycleBasecall | Man page |
| perCycleBasecall,RqcResultSet-method | Man page |
| perCycleBasecall,list-method | Man page |
| perCycleQuality | Man page |
| perCycleQuality,RqcResultSet-method | Man page |
| perCycleQuality,list-method | Man page |
| perFileInformation | Man page |
| perFileInformation,RqcResultSet-method | Man page |
| perFileInformation,list-method | Man page |
| perFileTopReads | Man page |
| perFileTopReads,RqcResultSet-method | Man page |
| perFileTopReads,list-method | Man page |
| perReadFrequency | Man page |
| perReadFrequency,RqcResultSet-method | Man page |
| perReadFrequency,list-method | Man page |
| perReadQuality | Man page |
| perReadQuality,RqcResultSet-method | Man page |
| perReadQuality,list-method | Man page |
| perReadWidth | Man page |
| perReadWidth,RqcResultSet-method | Man page |
| perReadWidth,list-method | Man page |
| rqc | Man page Source code |
| rqcCycleAverageQualityCalc | Man page Source code |
| rqcCycleAverageQualityPcaCalc | Man page Source code |
| rqcCycleAverageQualityPcaPlot | Man page Source code |
| rqcCycleAverageQualityPlot | Man page Source code |
| rqcCycleBaseCallsCalc | Man page Source code |
| rqcCycleBaseCallsLinePlot | Man page Source code |
| rqcCycleBaseCallsPlot | Man page Source code |
| rqcCycleGCCalc | Man page Source code |
| rqcCycleGCPlot | Man page Source code |
| rqcCycleQualityBoxCalc | Man page Source code |
| rqcCycleQualityBoxPlot | Man page Source code |
| rqcCycleQualityCalc | Man page Source code |
| rqcCycleQualityPlot | Man page Source code |
| rqcFileHeatmap | Man page Source code |
| rqcGroupCycleAverageQualityCalc | Man page Source code |
| rqcGroupCycleAverageQualityPlot | Man page Source code |
| rqcQA | Man page |
| rqcQA,BamFile-method | Man page |
| rqcQA,FastqFile-method | Man page |
| rqcQA,character-method | Man page |
| rqcQA,list-method | Man page |
| rqcReadFrequencyCalc | Man page Source code |
| rqcReadFrequencyPlot | Man page Source code |
| rqcReadQualityBoxCalc | Man page Source code |
| rqcReadQualityBoxPlot | Man page Source code |
| rqcReadQualityCalc | Man page Source code |
| rqcReadQualityPlot | Man page Source code |
| rqcReadWidthCalc | Man page Source code |
| rqcReadWidthPlot | Man page Source code |
| rqcReport | Man page Source code |
| rqcShinyReport | Man page Source code |
| stats4trim | Man page Source code |
| subsetByGroup | Man page Source code |
| subsetByPair | Man page Source code |
| toRRDNA | Man page Source code |
