rqcReadQualityBoxPlot: Per read mean quality box plot
In Rqc: Quality Control Tool for High-Throughput Sequencing Data

Description Usage Arguments Value Functions Author(s) Examples

This function creates crate a graphic charts with box plots describing per read mean quality distribution for each input file

1
2
3

rqcReadQualityBoxCalc(rqcResultSet)

rqcReadQualityBoxPlot(rqcResultSet)

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Plot object from ggplot function.

rqcReadQualityBoxCalc: calculates necessary statistics

Welliton Souza

checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcReadQualityBoxPlot(rqcResultSet)