rqcReadQualityBoxPlot: Per read mean quality box plot

Description Usage Arguments Value Functions Author(s) Examples

View source: R/rqcReadQualityBoxPlot.R

Description

This function creates crate a graphic charts with box plots describing per read mean quality distribution for each input file

Usage

1
2
3
rqcReadQualityBoxCalc(rqcResultSet)

rqcReadQualityBoxPlot(rqcResultSet)

Arguments

rqcResultSet

list of RqcResultSet objects created by rqc and rqcQA functions.

Value

Plot object from ggplot function.

Functions

Author(s)

Welliton Souza

Examples

1
2
3
4
5
6
checkpoint("Rqc", path=system.file(package="Rqc", "extdata"), {
  folder <- system.file(package="ShortRead", "extdata/E-MTAB-1147")
  files <- list.files(full.names=TRUE, path=folder)
  rqcResultSet <- rqcQA(files, pair=c(1,1), workers=1)
}, keep="rqcResultSet")
rqcReadQualityBoxPlot(rqcResultSet)

Rqc documentation built on Nov. 8, 2020, 5:11 p.m.