matdist: Distance matrix of the similarity between the DNA sequences.

In Rqc: Quality Control Tool for High-Throughput Sequencing Data

Description

This function receives a vector of strings representing codified DNA sequences and returns a integer matrix representing the similarities between all sequences from input vectors.

Usage

matdist(rrdnas)

Arguments

rrdnas

Vector of codified DNA sequences (character vector).

Value

Matrix n x n, where n is the length of the largest original DNA sequence.

Note

This function is used internally to compute data for rqcFileHeatmap function.

Author(s)

Welliton Souza

See Also

rqcFileHeatmap

Examples

dna1 <- toRRDNA("atcgn")
dna2 <- toRRDNA("atcga")
matdist(c(dna1, dna2))

Rqc documentation built on Nov. 8, 2020, 5:11 p.m.