toRRDNA: Title: Convert DNA sequences to Reduced Representation format

In Rqc: Quality Control Tool for High-Throughput Sequencing Data

Description

This function receives a vector of strings (character vector) containing DNA sequences and returns a vector of strings containing codified DNA.

Usage

toRRDNA(dnas)

Arguments

dnas	Vector of DNA sequences (character vector).

Value

Vector of DNA converted to reduced representation format (character vector).

Note

This function is used internally to compute top over-represented reads and to store in RqcResultSet objects (per file top reads).

Author(s)

Welliton Souza

See Also

perFileTopReads

Examples

dna <- "ATCGNATCGTA"
dna.converted <- toRRDNA(dna)
nchar(dna)
nchar(dna.converted)

Rqc documentation built on Nov. 8, 2020, 5:11 p.m.