R/rqcCycleAverageQualityCalc.R

Defines functions rqcCycleAverageQualityCalc

Documented in rqcCycleAverageQualityCalc

#' @describeIn rqcCycleAverageQualityPlot calculates necessary statistics
#' @export
rqcCycleAverageQualityCalc <- function(rqcResultSet)
{
    f <- function(x) {
        quality <- mean(Rle(x$score, x$count))
        data.frame(quality)
    }
    
    df <- perCycleQuality(rqcResultSet)
    ddply(df, c("group", "filename", "cycle"), f)
}

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Rqc documentation built on Nov. 8, 2020, 5:11 p.m.