LogLik: Constructor for LogLik class

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

A container for the log likelihood of the Viterbi state path. Stores the log likelihood from succesive updates of model parameters. When the difference between the log likelihoods at iteration i and i-1 is below the tolerance, no additional updates are performed.

Usage

LogLik(loglik = numeric(), tolerance = 1L)

Arguments

loglik	length-one numeric vector for the log likelihood of the Viterbi state path
tolerance	if the difference in the log-likelihood of the Viterbi state path after the Baum-Welch update is less than the specified tolerance, no additional Baum-Welch updates are required

See Also

LogLik

VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.