SnpGRanges: An extension to GRanges for representing SNPs
In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays
Description
Usage
Arguments
Slots
Examples
Description
An extension to GRanges for representing SNPs
Constructor for SnpGRanges class
Usage
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SnpGRanges(object = GRanges(), isSnp, ...)
## S4 method for signature 'missing'
SnpGRanges(object, isSnp)
## S4 method for signature 'GRanges'
SnpGRanges(object, isSnp)
Arguments
object
A GRanges object
isSnp
A logical vector. Each genomic interval in the
GRanges container corresponds to a marker on the genotyping
array. isSnp is FALSE for nonpolymorphic markers such as
those included on the Affymetrix 6.0 chips.
...
ignored
Slots
elementMetadataa SnpDataFrame
Examples
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SnpGRanges()
g <- GRanges("chr1", IRanges(15L, 15L))
SnpGRanges(g, isSnp=TRUE)
VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.
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Description Usage Arguments Slots Examples
Description
An extension to GRanges for representing SNPs
Constructor for SnpGRanges class
Usage
1 2 3 4 5 6 7 | SnpGRanges(object = GRanges(), isSnp, ...)
## S4 method for signature 'missing'
SnpGRanges(object, isSnp)
## S4 method for signature 'GRanges'
SnpGRanges(object, isSnp)
|
Arguments
object |
A |
isSnp |
A logical vector. Each genomic interval in the
|
... |
ignored |
Slots
elementMetadataa
SnpDataFrame
Examples
1 2 3 | SnpGRanges()
g <- GRanges("chr1", IRanges(15L, 15L))
SnpGRanges(g, isSnp=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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