LowLevelSummaries: Accessor for SNP genotypes

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

Extract SNP genotypes. Genotypes are assumed to be represented as integers: 1=AA, 2=AB, 3=BB.

Usage

genotypes(object)

## S4 method for signature 'ArrayViews'
lrr(object)

## S4 method for signature 'ArrayViews'
baf(object)

## S4 method for signature 'ArrayViews'
genotypes(object)

## S4 method for signature 'SnpArrayExperiment'
baf(object)

## S4 method for signature 'SnpArrayExperiment'
copyNumber(object)

## S4 method for signature 'SnpArrayExperiment'
lrr(object)

## S4 method for signature 'SnpArrayExperiment'
genotypes(object)

Arguments

object

see showMethods("genotypes")

See Also

copyNumber

VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.