IdiogramParam-class: Constructor for IdiogramParam objects

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

Parameters for plotting idiograms

Usage

IdiogramParams(
  seqnames = character(),
  seqlengths = numeric(),
  unit = "kb",
  genome = "hg19",
  box = list(color = "blue", lwd = 1)
)

## S4 method for signature 'IdiogramParams,ANY'
plot(x, y, ...)

Arguments

seqnames	length-one character vector providing chromosome name
seqlengths	length-one numeric vector indicating size of chromosome
unit	character string indicating unit for genomic position
genome	character string indicating genome build
box	a list of parameters for plotting the box around the part of the idiogram that is plotted
x	an IdiogramParam object
y	ignored
...	ignored

Value

IdiogramParam object

VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.