HmmTrellisParam: Constructor for HmmTrellisParam class

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

Constructor for HmmTrellisParam class

Usage

HmmTrellisParam(
  ylimits = list(c(0, 1), c(-3, 1)),
  expandfun = function(g) {     width(g) * 50 }
)

Arguments

ylimits	length-two list of the y-axis limits for B allele frequencies and log R ratios, respectively
expandfun	a function that takes a length-one GRanges object as an argument and computes a width relative to the width of the GRanges object

VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.