snpArrayAssays: Create an assays object from log R ratios and B allele...

In VanillaICE: A Hidden Markov Model for high throughput genotyping arrays

Description

This function is exported primarily for internal use by other BioC packages.

Usage

snpArrayAssays(cn = new("matrix"), baf = new("matrix"), ...)

Arguments

cn	matrix of log R ratios
baf	matrix of B allele frequencies
...	additional matrices of the same dimension, such as SNP genotypes.

Examples

data(snp_exp, package="VanillaICE")
r <- lrr(snp_exp)
b <- baf(snp_exp)
sl <- snpArrayAssays(cn=r, baf=b)

VanillaICE documentation built on Nov. 8, 2020, 7:33 p.m.