prepareExpressionDrugSensitivityAssociation: Prepare gene expression and drug sensitivity correlation...
In cTRAP: Identification of candidate causal perturbations from differential gene expression data

Prepare gene expression and drug sensitivity correlation matrix

prepareExpressionDrugSensitivityAssociation(
  dataset = c("GDSC 7", "CTRP 2.1", "NCI60"),
  method = "spearman"
)

`dataset`	Character: dataset to use (`CTRP`, `GDSC` or `NCI60`)
`method`	Character: correlation method to use between gene expression and drug sensitivity

If path directs to non-existing files, data will be downloaded.

Correlation matrix between gene expression and drug sensitivity

cTRAP documentation built on Nov. 8, 2020, 10:58 p.m.

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