initializeBioMatrixPlot: Set Up Parameters for caOmicsV bioMatrix Plot Layout

Description Usage Arguments Value Author(s) Examples

Description

Initialize parameters for caOmicsV bioMatrix layout to set up plot area size and item sizes.

Usage

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    initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,   
        numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,   
        columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,   
        remarkWidth=1, summaryWidth=1, sampleNameHeight=1, 
        legendHeight=1)

Arguments

numOfGenes

non-negative numeric, total number of genes to be plotted

numOfSamples

non-negative numeric, total number of samples to be plotted

numOfPhenotypes

non-negative numeric, total number of phenotypes to be plotted

sampleHeight

non-negative numeric, height of rectangle area in inch for a sample plot

sampleWidth

non-negative numeric, width of rectangle area in inch for a sample plot

columnPadding

non-negative numeric, width of padding, in inch, between two rectangles (samples)

rowPadding

non-negative numeric, height of padding in inch between two rows (genes)

geneNameWidth

non-negative numeric, width of plot area in inch for gene name plot

remarkWidth

non-negative numeric, width of plot area in inch for second set of gene names and summary data.

summaryWidth

non-negative numeric, width of data plot area in inch to plot summary info in text or bars.

sampleNameHeight

non-negative numeric, height of plot area in inch for sample names (sample name are plotted vertically).

legendHeight

non-negative numeric, height of plot area in inch for legend.

Value

None

Author(s)

Henry Zhang

Examples

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    initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,
        numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,
        columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,
        remarkWidth=1, summaryWidth=1, sampleNameHeight=1, 
        legendHeight=1)


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