Set Up Parameters for caOmicsV bioMatrix Plot Layout

Description

Initialize parameters for caOmicsV bioMatrix layout to set up plot area size and item sizes.

Usage

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    initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,   
        numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,   
        columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,   
        remarkWidth=1, summaryWidth=1, sampleNameHeight=1, 
        legendHeight=1)

Arguments

numOfGenes

non-negative numeric, total number of genes to be plotted

numOfSamples

non-negative numeric, total number of samples to be plotted

numOfPhenotypes

non-negative numeric, total number of phenotypes to be plotted

sampleHeight

non-negative numeric, height of rectangle area in inch for a sample plot

sampleWidth

non-negative numeric, width of rectangle area in inch for a sample plot

columnPadding

non-negative numeric, width of padding, in inch, between two rectangles (samples)

rowPadding

non-negative numeric, height of padding in inch between two rows (genes)

geneNameWidth

non-negative numeric, width of plot area in inch for gene name plot

remarkWidth

non-negative numeric, width of plot area in inch for second set of gene names and summary data.

summaryWidth

non-negative numeric, width of data plot area in inch to plot summary info in text or bars.

sampleNameHeight

non-negative numeric, height of plot area in inch for sample names (sample name are plotted vertically).

legendHeight

non-negative numeric, height of plot area in inch for legend.

Value

None

Author(s)

Henry Zhang

Examples

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    initializeBioMatrixPlot(numOfGenes=100, numOfSamples=100,
        numOfPhenotypes=1, sampleHeight=0.4, sampleWidth=0.1,
        columnPadding=0.025, rowPadding=0.1, geneNameWidth=1,
        remarkWidth=1, summaryWidth=1, sampleNameHeight=1, 
        legendHeight=1)

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