getRelatedPlotData: Extract subset from A Data Frame Based on Relational...
In caOmicsV: Visualization of multi-dimentional cancer genomics data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Extract subset of plot data based on relational information, e.g.,
expression of miRNA or DNA copy number variations that are correlated to
differentially expressed genes
Usage
1
getRelatedPlotData(omicsData, linkData, geneNames)
Arguments
omicsData
a data frame, the dataset from which subset is extracted
linkData
a data frame, usually gene names and their related items. The first column
must be the items to which the second item is linked to.
geneNames
character vector, subset of gene names for subset.
Value
A data frame with subset of the first input data.
Author(s)
Henry Zhang
Examples
1
2
3
4
data(miRNA)
data(RNA2miRNA)
geneNames <- as.character(RNA2miRNA[,1])
miRNAexpr <- getRelatedPlotData(miRNA, RNA2miRNA, geneNames)
caOmicsV documentation built on Nov. 8, 2020, 8:23 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Extract subset of plot data based on relational information, e.g., expression of miRNA or DNA copy number variations that are correlated to differentially expressed genes
Usage
1 | getRelatedPlotData(omicsData, linkData, geneNames)
|
Arguments
omicsData |
a data frame, the dataset from which subset is extracted |
linkData |
a data frame, usually gene names and their related items. The first column must be the items to which the second item is linked to. |
geneNames |
character vector, subset of gene names for subset. |
Value
A data frame with subset of the first input data.
Author(s)
Henry Zhang
Examples
1 2 3 4 | data(miRNA)
data(RNA2miRNA)
geneNames <- as.character(RNA2miRNA[,1])
miRNAexpr <- getRelatedPlotData(miRNA, RNA2miRNA, geneNames)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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