Description Usage Arguments Value Author(s) Examples
View source: R/caOmicsV.bioMatrix.R
Headmap plot method for bioMatrix layout. This function will plot all rows of the input data. bioMatrix layout and graphic device must be initialized first.
1 2 3 | plotBioMatrixHeatmap(exprData, topAdjust=0, bottomAdjust=0,
maxValue=NULL, minValue=NULL,
heatmapColor="BlueWhiteRed", skipPlotRow=0)
|
exprData |
numeric matrix (log2 values) with row names |
topAdjust |
non-negative numeric, height of top y coordinate should be reduced to show different layers, default 0 |
bottomAdjust |
non-negative numeric, height of bottom y coordinate should be reduced for a small rectangle, default 0 |
maxValue |
numeric, value for highest color in heatmap, set to NULL to use the maximum value in expression dataset |
minValue |
numeric, value for lowest color in heatmap, set to NULL to use the minimum value in expression dataset |
heatmapColor |
character vector,one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed" |
skipPlotRow |
non-negative integer, total rows on plot area that should be skipped, default 0 |
None
Henry Zhang
1 2 3 4 5 6 7 | initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
showBioMatrixPlotLayout("Gene", paste("Sample", 1:50), "Diagnosis")
data(biomatrixPlotDemoData)
exprData <- biomatrixPlotDemoData$heatmapData[[1]]
exprData <- matrix(exprData[1, 1:50], nrow=1)
plotBioMatrixHeatmap(exprData, maxValue=3, minValue=-3)
|
Loading required package: igraph
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Loading required package: bc3net
Loading required package: c3net
Loading required package: infotheo
Loading required package: Matrix
Loading required package: lattice
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