plotBioNetCircos: Default Plot Method for caOmicsV bioNetCircos Layout

Description Usage Arguments Value Author(s) Examples

View source: R/caOmicsV.R

Description

A sample way to plot sample information and genomic data with default settings. This method is mainly for demo purpose. In most cases, users need make changes based on this display, specifically the igraph layout.

Usage

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    plotBioNetCircos(dataSet, graph=NULL, heatmapMax=NULL, heatmapMin=NULL, 
            heatmapColor="BlueWhiteRed")

Arguments

dataSet

an object returned from method of getESet() that contains all data for plot

graph

an igraph object generated with one plot dataset, e.g, gene expression value

heatmapColor

character vector, one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed", "YellowToRed", and "Black".

heatmapMax

numeric, maximum value for heatmap plot, set to NULL to use the biggest value in input data set.

heatmapMin

numeric, minimum value for heatmap plot, set to NULL to use the smallest value in input data set.

Value

None

Author(s)

Henry Zhang

Examples

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caOmicsV documentation built on Nov. 17, 2017, 10:37 a.m.