plotBioMatrix: Default Plot Method for caOmicsV bioMatrix Layout Plot

In caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

A sample way to plot sample information and genomic data with default settings.

Usage

    plotBioMatrix(dataSet, summaryType=c("text", "bar"), summarybyRow=TRUE, 
        heatmapMax=NULL, heatmapMin=NULL, heatmapColor="BlueWhiteRed")

Arguments

dataSet	an object, returned from method of getPlotDataSet(), with all plot data
summaryType	character vector, either "text" or "bar", for plot type of summary data
summarybyRow	logic, if the summary data is for each row or for each column
heatmapMax	numeric, maximum value for heatmap plot, set to NULL to use the maximum value in input data.
heatmapMin	numeric, minimum value for heatmap plot, set to NULL to use the minimum value in input data.
heatmapColor	character vector,one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed"

Value

None

Author(s)

Henry Zhang

Examples

    data(biomatrixPlotDemoData)
    plotBioMatrix(biomatrixPlotDemoData, summaryType="text", 
        summarybyRow=TRUE, heatmapMax=3, heatmapMin=-3, 
        heatmapColor="BlueWhiteRed") 

caOmicsV documentation built on Nov. 8, 2020, 8:23 p.m.