showBioMatrixPlotLayout: Display caOmicsV bioMatrix Layout

In caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Display caOmicsV bioMatrix layout with default information for each plot area for purpose of optimizing the layout. A bioMatrix layout must be initialized first.

Usage

    showBioMatrixPlotLayout(geneNames, sampleNames, phenotypes, 
            secondGeneNames,  sampleColors=NULL, geneColors=NULL, 
            phenoColors=NULL)

Arguments

geneNames	character vector, gene names shown at left side of omics data plot area
sampleNames	character vector, sample names shown on the top of phenotype plot area
phenotypes	character vector, phenotype names listed on left side of phenotype plot area
secondGeneNames	character vector, second gene names shown at right side of omics data area
sampleColors	character vector for color name(s) of R color specification for samples
geneColors	character vector of color name or R color specification for genes
phenoColors	character vector of color name(s) or R color specification for phenotypes

Value

None

Author(s)

Henry Zhang

Examples

    initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
    showBioMatrixPlotLayout(geneNames="Gene", 
            sampleNames=paste("Sample", 1:50),  
            phenotypes="Diagnosis", secondGeneNames="miRNA")

Example output

Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: bc3net
Loading required package: c3net
Loading required package: infotheo
Loading required package: Matrix
Loading required package: lattice

caOmicsV documentation built on Nov. 8, 2020, 8:23 p.m.