Files in chimeraviz
Visualization tools for gene fusions

NEWS
DESCRIPTION
NAMESPACE
inst/NEWS
inst/scripts/rsubread.R inst/scripts/bowtie.R inst/doc/chimeraviz-vignette.Rmd inst/doc/chimeraviz-vignette.R
inst/doc/chimeraviz-vignette.html
inst/extdata/fusion5267and11759reads.bam
inst/extdata/UCSC.MM10.Mus.musculus.CytoBandIdeogram.txt
inst/extdata/reads.1.fq
inst/extdata/infusion_fusions.txt
inst/extdata/UCSC.HG38.Human.CytoBandIdeogram.txt
inst/extdata/fusioncatcher_833ke_final-list-candidate-fusion-genes.txt
inst/extdata/PRADA.acc.fusion.fq.TAF.tsv
inst/extdata/fusion5267and11759reads.bam.bai
inst/extdata/star-fusion.fusion_candidates.final.abridged.txt
inst/extdata/jaffa_results.csv
inst/extdata/UCSC.HG19.Human.CytoBandIdeogram.txt
inst/extdata/reads_supporting_defuse_fusion_5267.2.fq
inst/extdata/reads.2.fq
inst/extdata/5267readsAligned.bam.bai
inst/extdata/defuse_833ke_results.filtered.tsv
inst/extdata/FusionMap_01_TestDataset_InputFastq.FusionReport.txt
inst/extdata/soapfuse_833ke_final.Fusion.specific.for.genes
inst/extdata/Homo_sapiens.GRCh37.74.sqlite
inst/extdata/fusion5267and11759reads.bedGraph
inst/extdata/Homo_sapiens.GRCh37.74_subset.gtf
inst/extdata/5267readsAligned.bam
inst/extdata/protein_domains_5267.bed
inst/extdata/reads_supporting_defuse_fusion_5267.1.fq
inst/extdata/ericscript_SRR1657556.results.total.tsv
inst/reports/fusionListReport.Rmd vignettes/chimeraviz-vignette.Rmd R/plot_circle.R R/plot_fusion_transcript_with_protein_domain.R R/plot_transcripts.R R/import_infusion.R R/import_prada.R R/import_defuse.R R/chimeraviz.R R/import_fusionmap.R R/import_jaffa.R R/import_soapfuse.R R/utilities.R R/import_fusioncatcher.R R/AllClasses.R R/reports.R R/plot_fusion_transcript.R R/import_starfusion.R R/extdata.R R/plot_fusion_reads.R R/plot_fusion_transcripts_graph.R R/get_fusion_by.R R/import_ericscript.R R/plot_fusion.R man/raw_infusion.Rd man/upstream_partner_gene.Rd man/plot_circle.Rd man/import_fusionmap.Rd man/import_prada.Rd man/plot_fusion_transcript.Rd man/raw_starfusion.Rd man/raw_defuse.Rd man/import_soapfuse.Rd man/raw_fusionmap.Rd man/get_fusion_by_id.Rd man/raw_ericscript.Rd man/chimeraviz-internals-fusions_to_link_data.Rd man/plot_fusion.Rd man/import_jaffa.Rd man/import_defuse.Rd man/raw_fusioncatcher.Rd man/get_fusion_by_gene_name.Rd man/raw_fusion5267proteindomains.Rd man/show-PartnerGene-method.Rd man/get_ensembl_ids.Rd man/get_transcripts_ensembl_db.Rd man/create_fusion_report.Rd man/write_fusion_reference.Rd man/raw_cytobandhg38.Rd man/select_transcript.Rd man/import_infusion.Rd man/chimeraviz.Rd man/down_shift.Rd man/raw_soapfuse.Rd man/partner_gene_junction_sequence.Rd man/plot_fusion_transcript_with_protein_domain.Rd man/import_function_non_ucsc.Rd man/plot_transcripts.Rd man/import_starfusion.Rd man/raw_prada.Rd man/add_fusion_reads_alignment.Rd man/get_fusion_by_chromosome.Rd man/chimeraviz-internals-scaleListToInterval.Rd man/raw_jaffa.Rd man/raw_fusion5267readsBedGraph.Rd man/split_on_utr_and_add_feature.Rd man/import_fusioncatcher.Rd man/import_ericscript.Rd man/show-Fusion-method.Rd man/fusion_to_data_frame.Rd man/Fusion-class.Rd man/fusion_split_reads_count.Rd man/raw_cytobandhg19.Rd man/plot_fusion_reads.Rd man/partner_gene_ensembl_id.Rd man/decide_transcript_category.Rd man/raw_Homo_sapiens.GRCh37.74.Rd man/raw_fusion5267reads.Rd man/fetch_reads_from_fastq.Rd man/plot_fusion_transcripts_graph.Rd man/fusion_spanning_reads_count.Rd man/PartnerGene-class.Rd man/downstream_partner_gene.Rd man/chimeraviz-internals-fusions_to_gene_label_data.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test_import_ericscript.R tests/testthat/test_import_starfusion.R tests/testthat/test_plot_fusion_reads.R tests/testthat/test_import_prada.R tests/testthat/test_import_fusionmap.R tests/testthat/test_import_soapfuse.R tests/testthat/test_plot_transcripts.R tests/testthat/test_import_infusion.R tests/testthat/test_plot_fusion_transcript_with_protein_domain.R tests/testthat/test_import_fusioncatcher.R tests/testthat/test_scale_list_to_interval.R tests/testthat/test_utilities.R tests/testthat/test_fusions_to_link_data.R tests/testthat/test_plot_fusion.R tests/testthat/test_select_transcript.R tests/testthat/test_plot_circle.R tests/testthat/test_fusions_to_gene_label_data.R tests/testthat/test_import_jaffa.R tests/testthat/test_create_fusion_report.R tests/testthat/test_import_defuse.R tests/testthat/test_get_fusion_by.R tests/testthat/test_plot_fusion_transcripts_graph.R tests/testthat/test_plot_fusion_transcript.R
chimeraviz documentation built on May 2, 2018, 2:43 a.m.