import_ericscript: Import results from a EricScript run into a list of Fusion...
In chimeraviz: Visualization tools for gene fusions

Description Usage Arguments Value Examples

A function that imports the results from a EricScript run into a list of Fusion objects.

1	import_ericscript(filename, genome_version, limit)

`filename`	Filename for the EricScript results file.
`genome_version`	Which genome was used in mapping (hg19, hg38, etc.).
`limit`	A limit on how many lines to read.

A list of Fusion objects.

ericscriptData <- system.file(
  "extdata",
  "ericscript_SRR1657556.results.total.tsv",
  package = "chimeraviz")
fusions <- import_ericscript(ericscriptData, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.