import_function_non_ucsc: Alternative import function for Gviz::AlignmentsTrack

Description Usage Arguments Value

Description

This alternative import function for use with Gviz::AlignmentsTrack imports a bamfile with non-UCSC chromosome names.

Usage

1

Arguments

file

The bamfile.

selection

Which regions to get from the bamfile.

Value

A GRanges object with coverage data for the selection.


chimeraviz documentation built on Jan. 19, 2021, 2 a.m.