get_fusion_by_chromosome: Find fusions that involves genes in the given chromosome.
In chimeraviz: Visualization tools for gene fusions
Description
Usage
Arguments
Value
Examples
View source: R/get_fusion_by.R
Description
Helper function to retrieve the Fusion objects that involves genes in the
given chromosome name.
Usage
1
get_fusion_by_chromosome(fusion_list, chr)
Arguments
fusion_list
A list of Fusion objects.
chr
The chromosome name we're looking for fusions in.
Value
A list of Fusion objects.
Examples
1
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3
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5
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7
defuse833ke <- system.file(
"extdata",
"defuse_833ke_results.filtered.tsv",
package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 1)
length(get_fusion_by_chromosome(fusions, "chr1"))
# [1] 1
chimeraviz documentation built on Jan. 19, 2021, 2 a.m.
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Description Usage Arguments Value Examples
View source: R/get_fusion_by.R
Description
Helper function to retrieve the Fusion objects that involves genes in the given chromosome name.
Usage
1 | get_fusion_by_chromosome(fusion_list, chr)
|
Arguments
fusion_list |
A list of Fusion objects. |
chr |
The chromosome name we're looking for fusions in. |
Value
A list of Fusion objects.
Examples
1 2 3 4 5 6 7 | defuse833ke <- system.file(
"extdata",
"defuse_833ke_results.filtered.tsv",
package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 1)
length(get_fusion_by_chromosome(fusions, "chr1"))
# [1] 1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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