Description Usage Arguments Value Examples
This getter retrieves the junction sequence from a PartnerGene object
1 2 3 4 | partner_gene_junction_sequence(x)
## S4 method for signature 'PartnerGene'
partner_gene_junction_sequence(x)
|
x |
The PartnerGene object you wish to retrieve the junction sequence for. |
The upstream fusion partner gene junction sequence.
1 2 3 4 5 6 7 8 9 | # Load data
defuseData <- system.file(
"extdata",
"defuse_833ke_results.filtered.tsv",
package="chimeraviz")
fusions <- import_defuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the junction sequence from the upstream fusion partner gene
partner_gene_junction_sequence(upstream_partner_gene(fusion))
|
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