partner_gene_junction_sequence: Get the junction sequence from a PartnerGene object

Description Usage Arguments Value Examples

Description

This getter retrieves the junction sequence from a PartnerGene object

Usage

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partner_gene_junction_sequence(x)

## S4 method for signature 'PartnerGene'
partner_gene_junction_sequence(x)

Arguments

x

The PartnerGene object you wish to retrieve the junction sequence for.

Value

The upstream fusion partner gene junction sequence.

Examples

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# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the junction sequence from the upstream fusion partner gene
partner_gene_junction_sequence(upstream_partner_gene(fusion))

chimeraviz documentation built on Jan. 19, 2021, 2 a.m.