import_soapfuse: Import results from a SOAPfuse run into a list of Fusion...
In chimeraviz: Visualization tools for gene fusions

Description Usage Arguments Value Examples

A function that imports the results from a SOAPfuse run, typically from a final.Fusion.specific.for.genes file, into a list of Fusion objects.

1	import_soapfuse(filename, genome_version, limit)

`filename`	Filename for the SOAPfuse final-list-candidate-fusion-genes.txt results file.
`genome_version`	Which genome was used in mapping (hg19, hg38, etc.).
`limit`	A limit on how many lines to read.

A list of Fusion objects.

soapfuse833ke <- system.file(
  "extdata",
  "soapfuse_833ke_final.Fusion.specific.for.genes",
  package = "chimeraviz")
fusions <- import_soapfuse(soapfuse833ke, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.