Description Usage Arguments Details Value Examples
A function that imports the results from a oncofuse run, typically from a results.filtered.tsv file, into a list of Fusion objects.
1 | import_oncofuse(filename, genome_version, limit)
|
filename |
Filename for the oncofuse results .tsv file. |
genome_version |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
This import function was contributed by Lavinia G, ref https://github.com/stianlagstad/chimeraviz/issues/47#issuecomment-409773158
A list of Fusion objects.
1 2 3 4 5 6 | oncofuse833ke <- system.file(
"extdata",
"oncofuse.outfile",
package="chimeraviz")
fusions <- import_oncofuse(oncofuse833ke, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.