Description Usage Arguments Value Examples
A function that imports the results from a SQUID run into a list of Fusion objects.
1 | import_squid(filename, genome_version, limit)
|
filename |
Filename for the SQUID results. |
genome_version |
Which genome was used in mapping (hg19, hg38, etc.). |
limit |
A limit on how many lines to read. |
A list of Fusion objects.
1 2 3 4 5 6 | squidfile <- system.file(
"extdata",
"squid_hcc1954_sv.txt",
package="chimeraviz")
fusions <- import_squid(squidfile, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.
|
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