Global functions | |
---|---|
C_assign_taxonomy2 | Source code |
C_eval_pair | Source code |
C_isACGT | Source code |
C_is_bimera | Source code |
C_matchRef | Source code |
C_matrixEE | Source code |
C_nwalign | Source code |
C_nwvec | Source code |
C_pair_consensus | Source code |
C_table_bimera2 | Source code |
PacBioErrfun | Man page Source code |
accumulateTrans | Source code |
addSpecies | Man page Source code |
assignSpecies | Man page Source code |
assignTaxonomy | Man page Source code |
bs1ham | Source code |
c,dada-method | Man page |
c,derep-method | Man page |
checkConvergence | Source code |
collapseNoMismatch | Man page Source code |
combineDereps2 | Source code |
dada | Man page Source code |
dada-class | Man page |
dada2-package | Man page |
dada_uniques | Source code |
derep-class | Man page |
derepFasta | Man page Source code |
derepFastq | Man page Source code |
errBalancedF | Man page |
errBalancedR | Man page |
fastqFilter | Man page Source code |
fastqPairedFilter | Man page Source code |
filt.print | Source code |
filterAndTrim | Man page Source code |
getAbund | Source code |
getBadBases | Source code |
getDadaOpt | Man page Source code |
getDerep | Source code |
getErrors | Man page Source code |
getNseq | Source code |
getSequences | Man page Source code |
getUniques | Man page Source code |
inflateErr | Man page Source code |
is.list.of | Source code |
is.sequence.table | Source code |
isBadBaseFP | Source code |
isBimera | Man page Source code |
isBimeraDenovo | Man page Source code |
isBimeraDenovoTable | Man page Source code |
isMatch | Source code |
isPhiX | Man page Source code |
isShift | Source code |
isShiftDenovo | Man page Source code |
isShiftedPair | Source code |
kdist_matches | Source code |
kmer_dist | Source code |
kmer_matches | Source code |
kord_dist | Source code |
learnErrors | Man page Source code |
loessErrfun | Man page Source code |
makeSequenceTable | Man page Source code |
makeSpeciesFasta_RDP | Man page Source code |
makeSpeciesFasta_Silva | Man page Source code |
makeTaxonomyFasta_RDP | Man page Source code |
makeTaxonomyFasta_Silva | Man page Source code |
makeTaxonomyFasta_SilvaNR | Man page Source code |
mapHits | Source code |
matchGenera | Source code |
mergePairs | Man page Source code |
mergeSequenceTables | Man page Source code |
names<-,dada,ANY-method | Man page |
names<-,derep,ANY-method | Man page |
noqualErrfun | Man page Source code |
nwalign | Man page Source code |
nwextract | Source code |
nwhamming | Man page |
parseFastqDirectory | Source code |
pfasta | Source code |
plotComplexity | Man page Source code |
plotErrors | Man page Source code |
plotQualityProfile | Man page Source code |
qtables2 | Man page Source code |
rc | Man page Source code |
removeBimeraDenovo | Man page Source code |
removePrimers | Man page Source code |
samdf_to_qiime2 | Source code |
sameOrder | Source code |
seqComplexity | Man page Source code |
seqtab_to_mothur | Source code |
seqtab_to_qiime | Source code |
setDadaOpt | Man page Source code |
show,dada-method | Man page |
show,derep-method | Man page |
sindex | Source code |
strdiff | Source code |
tperr1 | Man page |
uniques-vector | Man page |
uniquesToFasta | Man page Source code |
writeFasta,character-method | Man page |
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