activeModScoreHTML: Save HTML file with global gene scores from functional gene...

In maigesPack: Functions to handle cDNA microarray data, including several methods of data analysis

Description

This function takes an object of class maigesActMod, that is generated using the function activeMod to do functional classification of gene groups, and save an HTML file with global score for genes separated by gene groups (modules).

Usage

activeModScoreHTML(mod=NULL, dir="./", fileSave="scores")

Arguments

mod	object of class maigesActMod, resulted from functional classification of gene groups.
dir	character string giving the folder to save the file.
fileSave	string giving the file name. You don't need to put the extension 'html', it will be put automatically.

Value

This function generates an HTML file and don't return any R value or object.

Author(s)

Gustavo H. Esteves <[e-mail]>

See Also

plot.maigesActMod, activeMod

Examples

## Loading a little dataset
data(gastro)

## Doing functional classification of gene groups for 'Tissue' sample label
gastro.mod = activeMod(gastro.summ, sLabelID="Tissue", cutExp=1,
  cutPhiper=0.05)

activeModScoreHTML(gastro.mod)

maigesPack documentation built on Nov. 8, 2020, 6:23 p.m.