This class defines a structure to store the results from differential
expression analysis. This type of analysis can be done using the
for analysis between two biological sample types, or function
deGenesANOVA, for analysis between more than two sample
types using ANOVA models.
Objects of this class are produced by calling the functions
over an object of class
maiges or by calling the
deGenesANOVA over an object of class
maigesANOVA fitting an ANOVA model to the microarray dataset.
data frame containing the information regarding the genes from the dataset.
data frame similar to the
above, but containing information about the biological sample
types used in the analysis.
numerical matrix containing the fold values (mean difference between the sample types) when two sample types were compared. Each matrix column gives one specific test.
numerical matrix giving the statistic of the tests that were done. Each column represents on test.
numerical matrix giving the p-values of the statistical tests. Again, each column represents different tests.
character string giving the biological factors used in ANOVA model (when ANOVA models were used).
character string describing the test done.
character string giving date and time that the object were created.
list containg three characters. The first one is a string containing the R version used when the object was created. The second is a char vector with base packages and the last one is another char vector with additional packages and version numbers.
signature(x = 'maigesDE'): plot method for
maigesDE class. Display volcano plots.
signature(x = 'maigesDE'): print method for
signature(x = 'maigesDE'): show method for
signature(x = 'maigesDE'): summary method for
Gustavo H. Esteves <email@example.com>
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