Files in maigesPack
Functions to handle cDNA microarray data, including several methods of data analysis
.BBSoptions
NAMESPACE
DESCRIPTION
build/vignette.rds
src/Minfo.c
src/robustCorr.c
src/stats.h
src/stats.c
src/register.c
src/bootstrapT.c
data/gastro.RData
R/deGenes2by2BootT.R
R/deGenes2by2Ttest.R
R/calcA-methods.R
R/normLoc.R
R/createMaigesRaw.R
R/classifyKNN.R
R/dim-methods.R
R/classifySVMsc.R
R/normScaleLimma.R
R/bootstrapMI.R
R/activeNet.R
R/robustCorr.R
R/relNetworkB.R
R/show-methods.R
R/tablesDE.R
R/normRepLoess.R
R/AllGenerics.R
R/MI.R
R/deGenes2by2Wilcox.R
R/classifyKNNsc.R
R/activeModScoreHTML.R
R/kmeansMde.R
R/createTDMS.R
R/tableClass.R
R/summarizeReplicates.R
R/plotGenePair.R
R/hierM.R
R/colors.R
R/classifyLDA.R
R/normScaleMarray.R
R/image-methods.R
R/indexing-methods.R
R/somMde.R
R/loadData.R
R/hierMde.R
R/addPaths.R
R/compCorr.R
R/activeMod.R
R/heatmapsM.R
R/selSpots.R
R/designANOVA.R
R/calcW-methods.R
R/summary-methods.R
R/plot-methods.R
R/AllClasses.R
R/getLabels-methods.R
R/coerce-methods.R
R/deGenesANOVA.R
R/print-methods.R
R/bootstrapCor.R
R/activeNetScoreHTML.R
R/relNet2TGF.R
R/somM.R
R/classifyLDAsc.R
R/contrastsFitM.R
R/addGeneGrps.R
R/classifySVM.R
R/relNetworkM.R
R/kmeansM.R
R/bootstrapT.R
R/boxplot-methods.R
R/normOLIN.R
vignettes/maigesPack_tutorial.Rnw
vignettes/maigesPack.graphml
vignettes/maigesPack.png
vignettes/gastro/load_gastro.conf
vignettes/gastro/sampleFile.txt
vignettes/gastro/geneMap.txt
man/maigesClass-class.Rd
man/show-methods.Rd
man/dim-methods.Rd
man/normScaleMarray.Rd
man/classifyLDA.Rd
man/deGenes2by2Ttest.Rd
man/boxplot-methods.Rd
man/gastro.Rd
man/bootstrapMI.Rd
man/somMde.Rd
man/relNet2TGF.Rd
man/compCorr.Rd
man/activeNet.Rd
man/coerce-methods.Rd
man/activeMod.Rd
man/plotGenePair.Rd
man/relNetworkB.Rd
man/hierMde.Rd
man/getLabels.Rd
man/maigesDEcluster-class.Rd
man/maiges-class.Rd
man/maigesActMod-class.Rd
man/somM.Rd
man/loadData.Rd
man/bracketMethods.Rd
man/maigesRelNetM-class.Rd
man/classifyKNNsc.Rd
man/addGeneGrps.Rd
man/normRepLoess.Rd
man/normLoc.Rd
man/maigesPreRaw-class.Rd
man/calcW.Rd
man/normOLIN.Rd
man/activeNetScoreHTML.Rd
man/calcA.Rd
man/classifySVM.Rd
man/relNetworkM.Rd
man/maigesRaw-class.Rd
man/heatmapsM.Rd
man/createTDMS.Rd
man/hierM.Rd
man/selSpots.Rd
man/tablesDE.Rd
man/robustCorr.Rd
man/maigesRelNetB-class.Rd
man/bootstrapT.Rd
man/normScaleLimma.Rd
man/MI.Rd
man/addPaths.Rd
man/designANOVA.Rd
man/createMaigesRaw.Rd
man/classifySVMsc.Rd
man/maigesANOVA-class.Rd
man/maigesDE-class.Rd
man/print-methods.Rd
man/classifyLDAsc.Rd
man/summarizeReplicates.Rd
man/plot-methods.Rd
man/deGenesANOVA.Rd
man/bootstrapCor.Rd
man/contrastsFitM.Rd
man/tableClass.Rd
man/deGenes2by2Wilcox.Rd
man/summary-methods.Rd
man/activeModScoreHTML.Rd
man/deGenes2by2BootT.Rd
man/classifyKNN.Rd
man/kmeansMde.Rd
man/image-methods.Rd
man/kmeansM.Rd
man/maigesActNet-class.Rd
inst/doc/maigesPack_tutorial.Rnw
inst/doc/maigesPack_tutorial.R
inst/doc/maigesPack_tutorial.pdf
