createMaigesRaw: Function to create objects of class maigesRaw

In maigesPack: Functions to handle cDNA microarray data, including several methods of data analysis

Description

Function to create objects of class maigesRaw from objects of class maigesPreRaw.

Usage

createMaigesRaw(PreRaw, greenDataField, greenBackDataField, redDataField,
                redBackDataField, flagDataField, gLabelGrp, gLabelPath)

Arguments

PreRaw	object of class maigesPreRaw to be used to generate another object of class maigesRaw.
greenDataField	character string specifying the name of the Data slot from PreRaw that will be used to read the spot intensity values for green channel.
greenBackDataField	character string specifying the name of the Data slot from PreRaw that will be used to read the background intensity values for green channel.
redDataField	character string specifying the name of the Data slot from PreRaw that will be used to read the spot intensity values for red channel.
redBackDataField	character string specifying the name of the Data slot from PreRaw that will be used to read the background intensity values for red channel.
flagDataField	character string specifying the name of the Data slot from PreRaw that will be used to read the flag values.
gLabelGrp	character string with the gene label to match gene groups.
gLabelPath	character string with the gene label to match gene networks.

Value

The result of this function is an object of class maigesRaw.

Author(s)

Gustavo H. Esteves <[e-mail]>

See Also

loadData, maigesPreRaw,

Examples

## Load a little dataset
data(gastro)

## See the object
gastro

## Transform gastro into a maigesRaw object
gastro.raw = createMaigesRaw(gastro, greenDataField="Ch1.Mean",
  greenBackDataField="Ch1.B.Mean", redDataField="Ch2.Mean",
  redBackDataField="Ch2.B.Mean", flagDataField="Flags",
  gLabelGrp="GeneName", gLabelPath="GeneName")

maigesPack documentation built on Nov. 8, 2020, 6:23 p.m.