API for phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Global functions
ClusterPhenoTest	Man page Source code
ExpressionPhenoTest	Man page
[,epheno,ANY,ANY,ANY-method	Man page
[,epheno,ANY,ANY-method	Man page
approach	Man page
approach,epheno-method	Man page
barplotCI	Source code
barplotSignatures	Man page
barplotSignatures,epheno,GeneSet-method	Man page
barplotSignatures,epheno,GeneSetCollection-method	Man page
barplotSignatures,epheno,character-method	Man page
barplotSignatures,epheno,list-method	Man page
barplotSignatures-methods	Man page
barplotSignifSignatures	Man page
barplotSignifSignatures,epheno,GeneSet-method	Man page
barplotSignifSignatures,epheno,GeneSetCollection-method	Man page
barplotSignifSignatures,epheno,character-method	Man page
barplotSignifSignatures,epheno,list-method	Man page
barplotSignifSignatures-methods	Man page
checkGsetLen	Source code
checkGsetSimmetry	Source code
dim,epheno-method	Man page
enrichmentScore	Source code
epheno	Man page
epheno-class	Man page
epheno2html	Man page Source code
eset	Man page
eset.genelevel	Man page
eset2genelevel	Man page Source code
export2CSV	Man page
export2CSV,epheno-method	Man page
export2CSV-methods	Man page
findCopyNumber	Man page Source code
genesInArea	Man page Source code
getChrWithMedVar	Source code
getDistToClosest	Source code
getEs	Man page
getEs,gseaData-method	Man page
getEs,gseaSignaturesSign-method	Man page
getEs,gseaSignaturesVar-method	Man page
getEsPositions	Man page Source code
getEsSim	Man page
getEsSim,gseaData-method	Man page
getEsSim,gseaSignaturesSign-method	Man page
getEsSim,gseaSignaturesVar-method	Man page
getEsSimGam	Source code
getEsSimulations	Source code
getFc	Man page
getFc,epheno-method	Man page
getFcHr	Man page
getFcHr,gseaData-method	Man page
getFcHr,gseaSignaturesSign-method	Man page
getFcHr,gseaSignaturesVar-method	Man page
getHr	Man page
getHr,epheno-method	Man page
getIndivPvals	Source code
getMeans	Man page
getMeans,epheno-method	Man page
getNes	Man page
getNesGam	Source code
getNesObs	Source code
getNesSim	Source code
getNesSimGam	Source code
getPostProbs	Man page
getPostProbs,epheno-method	Man page
getPred	Source code
getPvals	Man page
getPvals,epheno-method	Man page
getRegions	Source code
getSignif	Man page
getSignif,epheno-method	Man page
getSourceData	Source code
getSummary	Source code
getSummaryDif	Man page
getSummaryDif,epheno-method	Man page
getVars2test	Man page
getVars2test,epheno-method	Man page
getVars2test-methods	Man page
gsea	Man page Source code
gsea.selGsets	Man page Source code
gsea.selVars	Man page Source code
gsea2html	Man page Source code
gseaData-class	Man page
gseaSignatures	Man page
gseaSignatures,ANY,GeneSet-method	Man page
gseaSignatures,ANY,character-method	Man page
gseaSignatures,epheno,GeneSetCollection-method	Man page
gseaSignatures,epheno,list-method	Man page
gseaSignatures,matrix,GeneSetCollection-method	Man page
gseaSignatures,matrix,list-method	Man page
gseaSignatures,numeric,GeneSetCollection-method	Man page
gseaSignatures,numeric,list-method	Man page
gseaSignatures-class	Man page
gseaSignatures-methods	Man page
gseaSignaturesSign-class	Man page
gseaSignaturesVar-class	Man page
gseaSignificance	Man page
gseaSignificance,gseaSignaturesSign-method	Man page
gseaSignificance,gseaSignaturesVar-method	Man page
gseaSignificanceSign-class	Man page
gseaSignificanceVar-class	Man page
heatmapPhenoTest	Man page
heatmapPhenoTest,ExpressionSet,GeneSet-method	Man page
heatmapPhenoTest,ExpressionSet,GeneSetCollection-method	Man page
heatmapPhenoTest,ExpressionSet,character-method	Man page
heatmapPhenoTest,ExpressionSet,list-method	Man page
heatmapPhenoTest,ExpressionSet,missing-method	Man page
heatmapPhenoTest-methods	Man page
libLoaded	Source code
logFcHr	Man page
logFcHr,epheno-method	Man page
p.adjust.method	Man page
p.adjust.method,epheno-method	Man page
pAdjust	Man page
pAdjust,epheno-method	Man page
pAdjust-methods	Man page
pca	Man page Source code
pca.2d	Source code
phenoClass	Man page
phenoClass,epheno-method	Man page
phenoNames	Man page
phenoNames,epheno-method	Man page
phenoTest	Man page
phenoTest-package	Man page
plot.gseaData	Man page Source code
plot.gseaSignaturesSign	Man page Source code
plot.gseaSignaturesVar	Man page Source code
plotCopyNumber	Source code
plotGSEA	Source code
plotGseaPreprocess	Source code
preProcess4Ace	Source code
preProcessX	Source code
qcPlot	Source code
rowSD	Source code
rowVar	Source code
selSignatures	Source code
show,ANY-method	Man page
show,AnnotatedDataFrame-method	Man page
show,LargeDataObject-method	Man page
show,MIAME-method	Man page
show,MethodDefinition-method	Man page
show,MethodSelectionReport-method	Man page
show,MethodWithNext-method	Man page
show,ObjectsWithPackage-method	Man page
show,ScalarCharacter-method	Man page
show,ScalarObject-method	Man page
show,TestResults-method	Man page
show,Versioned-method	Man page
show,Versions-method	Man page
show,VersionsNull-method	Man page
show,classRepresentation-method	Man page
show,container-method	Man page
show,eSet-method	Man page
show,epheno-method	Man page
show,genericFunction-method	Man page
show,gseaData-method	Man page
show,gseaSignaturesSign-method	Man page
show,gseaSignaturesVar-method	Man page
show,gseaSignificanceSign-method	Man page
show,gseaSignificanceVar-method	Man page
show,namedList-method	Man page
show,oldClass-method	Man page
show,signature-method	Man page
show,traceable-method	Man page
show-methods	Man page
smoothCoxph	Man page Source code
sortDragHtmlTable	Source code
summary.gseaData	Man page
summary.gseaSignificanceSign	Man page
summary.gseaSignificanceVar	Man page
tellNumPerm	Source code
write.html	Man page Source code

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.

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Note that we can't provide technical support on individual packages. You should contact the package authors for that.

phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

API for phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

R Package Documentation

Browse R Packages

We want your feedback!

phenoTest Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

API for phenoTest Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

R Package Documentation

Browse R Packages

We want your feedback!

phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

API for phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.