gseaSignatures-class: Class "gseaSignatures" ES and EsSim container.

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

This object contains de ES (enrichment scores) and simulated ES that will be used in the GSEA (Gene Set Enrichment Analysis) process.

Objects from the Class

Objects can be created by calls of the form new("gseaSignatures", ...).

Slots

.Data:

Object of class "list" .

es:

Object of class "numeric" Contains the observed enrichment scores. The ones that were compted from the data without permuting anything.

es.sim:

Object of class "numeric" Contains the enrichment score that were obtained after permutations.

signature:

Object of class "numeric" The subset of genes we are interested in.

Extends

Class "list", from data part. Class "vector", by class "list", distance 2. Class "AssayData", by class "list", distance 2.

Methods

No methods defined with class "gseaSignatures" in the signature.

Author(s)

Evarist Planet

Examples

showClass("gseaSignatures")

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.