getGseaSignatures: Substract element's of a gseaSignaturesSign or...
In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description Usage Arguments Author(s)

getEs returns ES (enrichment scores) getEsSim returns simulated ES (needed to compute pvals), getNes returns NES (normalized enrichment scores) and getFcHr returns the fold changes or hazard used to compute the ES, simulated ES and NES.

getEs(x)
getEsSim(x)
getNes(x)
getFcHr(x)

`x`	an `gseaSignaturesSign` or `gseaSignaturesVar` object. Those objects are obtained using the `gseaSignatures` function.

Evarist Planet

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.

phenoTest index

Package overview Manual for the phenoTest library

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

getGseaSignatures: Substract element's of a gseaSignaturesSign or...
In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

Usage

Arguments

Author(s)

Related to getGseaSignatures in phenoTest...

R Package Documentation

Browse R Packages

We want your feedback!

phenoTest Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

getGseaSignatures: Substract element's of a gseaSignaturesSign or... In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

Usage

Arguments

Author(s)

Related to getGseaSignatures in phenoTest...

R Package Documentation

Browse R Packages

We want your feedback!

phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

getGseaSignatures: Substract element's of a gseaSignaturesSign or...
In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.