gseaSignificanceSign-class: Class "gseaSignificanceSign"

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

This object contains the results of the test of enrichment that was performed on each gene set. There is one container for every gene signature.

Objects from the Class

Objects can be created by calls of the form new("gseaSignificanceSign", ...).

Slots

.Data:

Object of class "list" .

gseaSignificance:

Object of class "matrix" Contains the statistics. Use the summary method to access this information.

p.adjust.method:

Object of class "character" The p-value adjustment method that was used.

Extends

Class "list", from data part. Class "vector", by class "list", distance 2. Class "AssayData", by class "list", distance 2.

Methods

No methods defined with class "gseaSignificanceSign" in the signature.

Author(s)

Evarist Planet

Examples

showClass("gseaSignificanceSign")

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.