gseaSignificanceVar-class: Class "gseaSignificanceVar"

In phenoTest: Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Description

This object contains the results of the test of enrichment that was performed on each gene set and phenotype. There is one container for every phenotype. Every one of this containers (of class gseaSignificanceSign) is a container itsef and has the results of the tests for all signatures. GseaSignificanceVar contains one element per phenotype (phenotypic variable). Every one of this elements is of class gseaSignificanceSign and contains one element per signature.

Objects from the Class

Objects can be created by calls of the form new("gseaSignificanceVar", ...).

Slots

.Data:

Object of class "list" .

gseaSignificance:

Object of class "gseaSignificanceSign" This object contains the results of the tests.

Extends

Class "list", from data part. Class "vector", by class "list", distance 2. Class "AssayData", by class "list", distance 2.

Methods

No methods defined with class "gseaSignificanceVar" in the signature.

Author(s)

Evarist Planet

Examples

showClass("gseaSignificanceVar")

phenoTest documentation built on Nov. 8, 2020, 7:53 p.m.